oligoClasses
This is the development version of oligoClasses; for the stable release version, see oligoClasses.
Classes for high-throughput arrays supported by oligo and crlmm
Bioconductor version: Development (3.23)
This package contains class definitions, validity checks, and initialization methods for classes used by the oligo and crlmm packages.
Author: Benilton Carvalho and Robert Scharpf
Maintainer: Benilton Carvalho <beniltoncarvalho at gmail.com> and Robert Scharpf <rscharpf at jhsph.edu>
Citation (from within R, enter
citation("oligoClasses")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("oligoClasses")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Infrastructure, Software |
| Version | 1.73.0 |
| In Bioconductor since | BioC 2.1 (R-2.6) (18 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14) |
| Imports | BiocGenerics(>= 0.27.1), Biobase(>= 2.17.8), methods, graphics, IRanges(>= 2.5.17), GenomicRanges(>= 1.23.7), SummarizedExperiment, Biostrings(>= 2.23.6), affyio(>= 1.23.2), foreach, BiocManager, utils, S4Vectors(>= 0.9.25), RSQLite, DBI, ff |
| System Requirements | |
| URL |
See More
| Suggests | hapmapsnp5, hapmapsnp6, pd.genomewidesnp.6, pd.genomewidesnp.5, pd.mapping50k.hind240, pd.mapping50k.xba240, pd.mapping250k.sty, pd.mapping250k.nsp, genomewidesnp6Crlmm (>= 1.0.7), genomewidesnp5Crlmm (>= 1.0.6), RUnit, human370v1cCrlmm, VanillaICE, crlmm |
| Linking To | |
| Enhances | doMC, doMPI, doSNOW, doParallel, doRedis |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | oligoClasses_1.73.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/oligoClasses |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/oligoClasses |
| Bioc Package Browser | https://code.bioconductor.org/browse/oligoClasses/ |
| Package Short Url | https://bioconductor.org/packages/oligoClasses/ |
| Package Downloads Report | Download Stats |