ASpli
This is the development version of ASpli; for the stable release version, see ASpli.
Analysis of Alternative Splicing Using RNA-Seq
Bioconductor version: Development (3.21)
Integrative pipeline for the analysis of alternative splicing using RNAseq.
Author: Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky and Ariel Chernomoretz
Maintainer: Ariel Chernomoretz <algo107 at gmail.com>
Citation (from within R, enter
citation("ASpli")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ASpli")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ASpli")| ASpli | R Script | |
| Reference Manual |
Details
| biocViews | Alignment, AlternativeSplicing, Coverage, DifferentialExpression, DifferentialSplicing, GeneExpression, GenomeAnnotation, ImmunoOncology, RNASeq, Sequencing, Software, TimeCourse, Transcription |
| Version | 2.17.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (8 years) |
| License | GPL |
| Depends | methods, grDevices, stats, utils, parallel, edgeR, limma, AnnotationDbi |
| Imports | GenomicRanges, GenomicFeatures, BiocGenerics, IRanges, GenomicAlignments, Gviz, S4Vectors, Rsamtools, BiocStyle, igraph, htmltools, data.table, UpSetR, tidyr, DT, MASS, grid, graphics, pbmcapply, txdbmaker |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | saseR |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ASpli_2.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/ASpli |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ASpli |
| Bioc Package Browser | https://code.bioconductor.org/browse/ASpli/ |
| Package Short Url | https://bioconductor.org/packages/ASpli/ |
| Package Downloads Report | Download Stats |