ppiData

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ppiData.

A package that contains the bait to prey directed graphs for protein-protein interactions.


Bioconductor version: 3.9

This package contains the directed graphs for protein interaction data as derived from Y2H and APMS as well as the code used to obtain the y2h data from IntAct Repository.

Author: Tony Chiang

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("ppiData")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ppiData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ppiData")
Using the package ppiStats PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData
Version 0.22.0
License Artistic-2.0
Depends graph
Imports AnnotationDbi
System Requirements
URL
See More
Suggests org.Sc.sgd.db, ppiStats
Linking To
Enhances
Depends On Me PCpheno, ppiStats
Imports Me
Suggests Me ScISI
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ppiData_0.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/ppiData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ppiData
Package Short Url https://bioconductor.org/packages/ppiData/
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