curatedAdipoChIP

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see curatedAdipoChIP.

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)


Bioconductor version: 3.9

A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.

Author: Mahmoud Ahmed [aut, cre]

Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>

Citation (from within R, enter citation("curatedAdipoChIP")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("curatedAdipoChIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("curatedAdipoChIP")
Using curatedAdipoChIP HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData
Version 1.0.0
License GPL-3
Depends R (>= 3.6), SummarizedExperiment, ExperimentHub
Imports
System Requirements
URL https://github.com/MahShaaban/curatedAdipoChIP
Bug Reports https://github.com/MahShaaban/curatedAdipoChIP/issues
See More
Suggests knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedAdipoChIP_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/curatedAdipoChIP
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/curatedAdipoChIP
Package Short Url https://bioconductor.org/packages/curatedAdipoChIP/
Package Downloads Report Download Stats