cgdv17

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see cgdv17.

Complete Genomics Diversity Panel, chr17 on 46 individuals


Bioconductor version: 3.9

Complete Genomics Diversity Panel, chr17 on 46 individuals

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("cgdv17")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cgdv17")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cgdv17")
cgdv17: extract from Complete Genomics diversity panel PDF R Script
Reference Manual PDF

Details

biocViews BiocViews, ExperimentData, SNPData, SequencingData
Version 0.22.0
License Artistic-2.0
Depends R (>= 2.15), methods, VariantAnnotation(>= 1.15.15)
Imports BiocGenerics, S4Vectors, IRanges, GenomicRanges, Biobase
System Requirements
URL
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Suggests parallel, GGtools, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, illuminaHumanv1.db
Linking To
Enhances
Depends On Me variants
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package cgdv17_0.22.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/cgdv17
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/cgdv17
Package Short Url https://bioconductor.org/packages/cgdv17/
Package Downloads Report Download Stats