DREAM4

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see DREAM4.

Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge


Bioconductor version: 3.9

Simulated expression data for five 10-node, and five 100-node networks, with associated data (including solutions) from the 2009 DREAM4 challenge.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("DREAM4")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DREAM4")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DREAM4")
DREAM4 Overview PDF R Script
DREAM4_InSilico_Description.pdf PDF
Reference Manual PDF

Details

biocViews ExperimentData, Genome, Saccharomyces_cerevisiae_Data, SequencingData
Version 1.20.0
License GPL
Depends R (>= 2.15.1), SummarizedExperiment
Imports
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Suggests RUnit, networkBMA
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DREAM4_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/DREAM4
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DREAM4
Package Short Url https://bioconductor.org/packages/DREAM4/
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