MafDb.1Kgenomes.phase1.hs37d5

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see MafDb.1Kgenomes.phase1.hs37d5.

Minor allele frequency data from 1000 Genomes Phase 1 for hs37d5


Bioconductor version: 3.9

Store minor allele frequency data from the Phase 1 of the 1000 Genomes Project for the human genome version hs37d5.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("MafDb.1Kgenomes.phase1.hs37d5")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MafDb.1Kgenomes.phase1.hs37d5")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version 3.7.1
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores(>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
System Requirements
URL
See More
Suggests SNPlocs.Hsapiens.dbSNP144.GRCh37
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me GenomicScores, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MafDb.1Kgenomes.phase1.hs37d5_3.7.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/MafDb.1Kgenomes.phase1.hs37d5/
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