BSgenome.Hsapiens.UCSC.hg19

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Hsapiens.UCSC.hg19.

Full genome sequences for Homo sapiens (UCSC version hg19)


Bioconductor version: 3.9

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg19, Feb. 2009) and stored in Biostrings objects.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.UCSC.hg19")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.4.0
License Artistic-2.0
Depends BSgenome(>= 1.33.5)
Imports BSgenome
System Requirements
URL
See More
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me annotation, BSgenome.Hsapiens.UCSC.hg19.masked, chimera, CODEX, motifRG, sequencing, traseR, variants
Imports Me appreci8R, BSgenome.Hsapiens.UCSC.hg19.masked, ChIPComp, decompTumor2Sig, MADSEQ, RareVariantVis, RCAS, TCGAWorkflow, trena
Suggests Me AneuFinder, ArrayTV, ATACseqQC, BadRegionFinder, Basic4Cseq, BBCAnalyzer, biovizBase, ChIPpeakAnno, chromVAR, CNEr, CRISPRseek, customProDB, DNAshapeR, esATAC, FDb.FANTOM4.promoters.hg19, FDb.UCSC.snp135common.hg19, FDb.UCSC.snp137common.hg19, gcapc, GenomicAlignments, GenomicFeatures, GenomicRanges, GenomicScores, GenVisR, ggbio, gmapR, GUIDEseq, Gviz, h5vc, InPAS, IntEREst, IsoformSwitchAnalyzeR, karyoploteR, MEDIPS, MinimumDistance, MiRaGE, motifbreakR, motifmatchr, MutationalPatterns, ORFik, OrganismDbi, PGA, plyranges, qsea, R453Plus1Toolbox, Rariant, REMP, rGADEM, RiboProfiling, Rsamtools, RSVSim, rtracklayer, SGSeq, signeR, SNPlocs.Hsapiens.dbSNP.20101109, SNPlocs.Hsapiens.dbSNP.20120608, SNPlocs.Hsapiens.dbSNP142.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh37, StructuralVariantAnnotation, VariantAnnotation, wavClusteR, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, YAPSA
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg19/
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