DepecheR v1.0.3 (Release date: 2019-06-28) Changes: * dResidualPlot bug making colors sometimes represent the wrong * group fixed. ============== DepecheR v1.0.2 (Release date: 2019-06-28) Changes: * Fixing the dColorPlot and the dDensityPlot functions, so that original names * in character vectors and factors are correctly displayed. ============== DepecheR v0.99.31 (Release date: 2019-03-13) Changes: * dColorPlot and dDensity plot simplified, in that it is now possible to add * just a vector of any kind, and it will be returned as colors. A colorScale * alternative, linking to dColorVector has been added to both functions as well. * A new legend has been added to dColorPlot. * The options createDirectory and directoryName have been removed from all * visualization functions and have been replaced by plotDir. * The different "name" arguments for plots have been streamlined to be called * plotName in all instances, to avoid using base function names for objects. * The testData dataset has been made smaller, to increase example execution time * and diminish pacakge size. ============== Changes: * dViolins completely worked over. Now, assymetrical violin plots are generated, * leading to a more succinct result. * Responses to all issues raised by BioConductor reviewer. * Bug fix in dual depeche DepecheR v0.99.30 (Release date: 2019-02-18) ============== Changes: * dViolins completely worked over. Now, assymetrical violin plots are generated, * leading to a more succinct result. * Responses to all issues raised by BioConductor reviewer. * Bug fix in dual depeche DepecheR v0.99.24 (Release date: 2019-01-24) ============== Changes: * Technical, internal changes: tests have been made more efficient. Redundant * and time consuming examples have been given a dontrun command. No changes to * user functions. DepecheR v0.99.20 (Release date: 2019-01-23) ============== Changes: * Selecting the number of used cores made more Windows-friendly. DepecheR v0.99.13 (Release date: 2019-01-18) ============== Changes: * Package size made considerably smaller. DepecheR v0.99.9 (Release date: 2019-01-15) ============== Changes: * The figure files connected to the vinjette have been moved out of the package * to a separate github directory. This will reduce the package size * significantly, and might make the linux version being able to find all the * pieces. DepecheR v0.99.3 (Release date: 2019-01-15) ============== Changes: * No errors or warnings in BiocCheckGitClone after removal of .Rapp.history * files. DepecheR v0.99.1 (Release date: 2019-01-14) ============== Changes: * C++ code reorganized, making package considerably smaller after build. * Package now passes both CMD check and BiocCheck without errors or warnings. DepecheR v0.81.4 (Release date: 2019-01-11) ============== Changes: * Multicore feature made functional for dColorPlot, increasing execution speed. DepecheR v0.81.3 (Release date: 2019-01-11) ============== Changes: * More minimal adaptions to make the software pass both CMD check, test_that tests and BiocCheck at the same time. DepecheR v0.81.2 (Release date: 2019-01-11) ============== Changes: * Minimal changes have been introduced in multiple functions to reduce the * number of notes in BiocCheck(): seq_len() is used instead of 1:, and vapply *is used instead of sapply. DepecheR v0.81.1 (Release date: 2019-01-10) ============== Changes: * A vignette has been created. * A visual bug, making the colors reversed in the residual plot function * compared to the dWilcox and DSplsda functions has been removed. * Formatting to satisfy the BioConductor criteria has been added. * Tests have been adapted to work after reformatting * No actual changes have been added to the code. DepecheR v0.80.3 (Release date: 2019-01-09) ============== Changes: * This is the first time the NEWS file is present. For all previous changes, and * those are hundreds, see the git history.