yriMulti

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see yriMulti.

support for expression, methylation, DHS, VCF for YRI


Bioconductor version: 3.7

expression, methylation, DHS for YRI

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("yriMulti")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("yriMulti")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("yriMulti")
yriMulti -- HapMap YRI population, multiassay interfaces PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData
Version 0.10.0
License Artistic-2.0
Depends Homo.sapiens, geuvPack, MultiAssayExperiment(>= 1.3.14)
Imports GenomicFiles(>= 1.13.6), VariantAnnotation(>= 1.23.1), gQTLBase, SummarizedExperiment, GenomicRanges, dsQTL, GenomeInfoDb
System Requirements
URL
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Suggests erma, BiocStyle, knitr, rmarkdown, gQTLstats(>= 1.9.2), doParallel, geuvPack, knitcitations, bibtex
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package yriMulti_0.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/yriMulti
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/yriMulti
Package Short Url https://bioconductor.org/packages/yriMulti/
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