msqc1

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see msqc1.

Sigma mix MSQC1 data


Bioconductor version: 3.7

The data set contains an eight technical replicate data set and a three replicate dilution series of the MS Qual/Quant QC Mix standard sample (Sigma-Aldrich, Buchs, Switzerland) measured on five different mass spec platforms at the Functional Genomics Center Zurich.

Author: Tobias Kockmann, Christian Trachsel, Christian Panse

Maintainer: Christian Panse <cp at fgcz.ethz.ch>

Citation (from within R, enter citation("msqc1")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("msqc1")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("msqc1")
ASMS 2016 poster (in portrait) abstract ID number: 282492 PDF R Script
Introducing msqc1 - A Mass Spec Data set for Targeted Proteomics Performance Evaluation HTML R Script
LC Observations - Retention Time Stability HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews ExperimentData, MassSpectrometryData, ReproducibleResearch
Version 1.8.0
License GPL
Depends R (>= 3.2), lattice, stats, utils
Imports
System Requirements
URL https://panoramaweb.org/labkey/MSQC1.url http://fgcz-bfabric.uzh.ch/bfabric/project.html?projectId=1959
See More
Suggests BiocStyle, knitr, testthat, specL
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me specL
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package msqc1_1.8.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/msqc1
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/msqc1
Package Short Url https://bioconductor.org/packages/msqc1/
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