methyvimData

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methyvimData.

Example experimental data for use with the methyvim package


Bioconductor version: 3.7

Contains a reduced set of simulated data inspired by data produced by the Infinium EPIC BeadChip assays by Illumina. The example data set is made available to highlight many of the key procedures that are available within the core functions of the methyvim package.

Author: Nima Hejazi [aut, cre]

Maintainer: Nima Hejazi <nhejazi at berkeley.edu>

Citation (from within R, enter citation("methyvimData")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methyvimData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methyvimData")
Anatomy of the `methyvimData` package HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews Clustering, DNAMethylation, DifferentialMethylation, ExperimentData, MethylSeq, MethylationArray
Version 1.2.0
License file LICENSE
Depends R (>= 3.4.0), minfi
Imports
System Requirements
URL
See More
Suggests Biobase, BiocStyle, SummarizedExperiment, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me methyvim
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methyvimData_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/methyvimData
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methyvimData
Package Short Url https://bioconductor.org/packages/methyvimData/
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