HiCDataHumanIMR90

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see HiCDataHumanIMR90.

Human IMR90 Fibroblast HiC data from Dixon et al. 2012


Bioconductor version: 3.7

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HiCDataHumanIMR90")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")
HiC Data Human Fibroblast Dixon et al. 2012 PDF R Script
Reference Manual PDF

Details

biocViews ExperimentData, GEO, Genome, Homo_sapiens_Data
Version 0.114.0
License GPL-3
Depends R (>= 2.10)
Imports
System Requirements
URL
See More
Suggests HiTC
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me HiTC
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HiCDataHumanIMR90_0.114.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/HiCDataHumanIMR90
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HiCDataHumanIMR90
Package Short Url https://bioconductor.org/packages/HiCDataHumanIMR90/
Package Downloads Report Download Stats