tracktables

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see tracktables.

Build IGV tracks and HTML reports


Bioconductor version: 3.7

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")
Creating IGV HTML reports with tracktables PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ReportWriting, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 3)
Depends R (>= 3.0.0)
Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
System Requirements
URL
See More
Suggests knitr, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tracktables_1.14.0.tar.gz
Windows Binary tracktables_1.14.0.zip
Mac OS X 10.11 (El Capitan) tracktables_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tracktables
Package Short Url https://bioconductor.org/packages/tracktables/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive