sigaR

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see sigaR.

Statistics for Integrative Genomics Analyses in R


Bioconductor version: 3.7

Facilitates the joint analysis of high-throughput data from multiple molecular levels. Contains functions for manipulation of objects, various analysis types, and some visualization.

Author: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Maintainer: Wessel N. van Wieringen <w.vanwieringen at vumc.nl>

Citation (from within R, enter citation("sigaR")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sigaR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigaR")
sigaR PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Pathways, Software, aCGH
Version 1.28.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License GPL (>= 2)
Depends Biobase, CGHbase, methods, mvtnorm
Imports corpcor (>= 1.6.2), graphics, igraph, limma, marray, MASS, penalized, quadprog, snowfall, stats
System Requirements
URL http://www.few.vu.nl/~wvanwie
See More
Suggests CGHcall
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package sigaR_1.28.0.tar.gz
Windows Binary sigaR_1.28.0.zip
Mac OS X 10.11 (El Capitan) sigaR_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/sigaR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/sigaR
Package Short Url https://bioconductor.org/packages/sigaR/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive