seqCNA

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see seqCNA.annot.

Copy number analysis of high-throughput sequencing cancer data


Bioconductor version: 3.7

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Citation (from within R, enter citation("seqCNA")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("seqCNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")
seqCNA.pdf PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Genetics, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-3
Depends R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
System Requirements samtools
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package seqCNA_1.26.0.tar.gz
Windows Binary seqCNA_1.26.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) seqCNA_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/seqCNA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/seqCNA
Package Short Url https://bioconductor.org/packages/seqCNA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive