phenoDist

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see phenoDist.

Phenotypic distance measures


Bioconductor version: 3.7

PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.

Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros

Maintainer: Xian Zhang <xianzhang at gmail.com>

Citation (from within R, enter citation("phenoDist")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phenoDist")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("phenoDist")
Introduction to phenoDist PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, Software
Version 1.27.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License LGPL-2.1
Depends R (>= 2.9.0), imageHTS, e1071
Imports
System Requirements
URL http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/
See More
Suggests GOstats, MASS
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phenoDist_1.27.0.tar.gz
Windows Binary phenoDist_1.27.0.zip
Mac OS X 10.11 (El Capitan) phenoDist_1.27.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/phenoDist
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/phenoDist
Package Short Url https://bioconductor.org/packages/phenoDist/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive