panelcn.mops

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see panelcn.mops.

CNV detection tool for targeted NGS panel data


Bioconductor version: 3.7

CNV detection tool for targeted NGS panel data. Extension of the cn.mops package.

Author: Verena Haunschmid, Gundula Povysil

Maintainer: Gundula Povysil <povysil at bioinf.jku.at>

Citation (from within R, enter citation("panelcn.mops")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("panelcn.mops")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("panelcn.mops")
panelcn.mops: Manual for the R package PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews CellBiology, CopyNumberVariation, Genetics, GenomicVariation, Sequencing, Software, VariantDetection
Version 1.2.0
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License LGPL (>= 2.0)
Depends R (>= 3.4), cn.mops, methods, utils, stats, graphics
Imports GenomicRanges, Rsamtools, IRanges, S4Vectors, GenomeInfoDb, grDevices
System Requirements
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Suggests knitr, rmarkdown, RUnit, BiocGenerics
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package panelcn.mops_1.2.0.tar.gz
Windows Binary panelcn.mops_1.2.0.zip
Mac OS X 10.11 (El Capitan) panelcn.mops_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/panelcn.mops
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/panelcn.mops
Package Short Url https://bioconductor.org/packages/panelcn.mops/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive