nudge

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see nudge.

Normal Uniform Differential Gene Expression detection


Bioconductor version: 3.7

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Citation (from within R, enter citation("nudge")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nudge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nudge")
nudge Overview PDF R Script
Reference Manual PDF

Details

biocViews DifferentialExpression, Microarray, Software, TwoChannel
Version 1.46.0
In Bioconductor since BioC 1.8 (R-2.3) (18 years)
License GPL-2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nudge_1.46.0.tar.gz
Windows Binary nudge_1.46.0.zip
Mac OS X 10.11 (El Capitan) nudge_1.46.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nudge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nudge
Package Short Url https://bioconductor.org/packages/nudge/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive