nethet

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see nethet.

A bioconductor package for high-dimensional exploration of biological network heterogeneity


Bioconductor version: 3.7

Package nethet is an implementation of statistical solid methodology enabling the analysis of network heterogeneity from high-dimensional data. It combines several implementations of recent statistical innovations useful for estimation and comparison of networks in a heterogeneous, high-dimensional setting. In particular, we provide code for formal two-sample testing in Gaussian graphical models (differential network and GGM-GSA; Stadler and Mukherjee, 2013, 2014) and make a novel network-based clustering algorithm available (mixed graphical lasso, Stadler and Mukherjee, 2013).

Author: Nicolas Staedler, Frank Dondelinger

Maintainer: Nicolas Staedler <staedler.n at gmail.com>, Frank Dondelinger <fdondelinger.work at gmail.com>

Citation (from within R, enter citation("nethet")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nethet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nethet")
nethet PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, GraphAndNetwork, Software
Version 1.12.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-2
Depends
Imports glasso, mvtnorm, parcor, GeneNet, huge, CompQuadForm, ggm, mclust, parallel, GSA, limma, multtest, ICSNP, glmnet, network, ggplot2
System Requirements
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Suggests knitr, xtable, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package nethet_1.12.0.tar.gz
Windows Binary nethet_1.12.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) nethet_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/nethet
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/nethet
Package Short Url https://bioconductor.org/packages/nethet/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive