methVisual

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see methVisual.

Methods for visualization and statistics on DNA methylation data


Bioconductor version: 3.7

The package 'methVisual' allows the visualization of DNA methylation data after bisulfite sequencing.

Author: A. Zackay, C. Steinhoff

Maintainer: Arie Zackay <arie.zackay at mail.huji.ac.il>

Citation (from within R, enter citation("methVisual")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methVisual")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methVisual")
Introduction to methVisual PDF R Script
Reference Manual PDF

Details

biocViews Classification, Clustering, DNAMethylation, Software
Version 1.32.0
In Bioconductor since BioC 2.6 (R-2.11) (14 years)
License GPL (>= 2)
Depends R (>= 2.11.0), Biostrings(>= 2.4.8), plotrix, gsubfn, grid, sqldf
Imports Biostrings, ca, graphics, grDevices, grid, gridBase, IRanges, stats, utils
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package methVisual_1.32.0.tar.gz
Windows Binary methVisual_1.32.0.zip
Mac OS X 10.11 (El Capitan) methVisual_1.32.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/methVisual
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/methVisual
Package Short Url https://bioconductor.org/packages/methVisual/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive