metabomxtr

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see metabomxtr.

A package to run mixture models for truncated metabolomics data with normal or lognormal distributions


Bioconductor version: 3.7

The functions in this package return optimized parameter estimates and log likelihoods for mixture models of truncated data with normal or lognormal distributions.

Author: Michael Nodzenski, Anna Reisetter, Denise Scholtens

Maintainer: Michael Nodzenski <michael.nodzenski at northwestern.edu>

Citation (from within R, enter citation("metabomxtr")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metabomxtr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metabomxtr")
metabomxtr PDF R Script
mixnorm PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews MassSpectrometry, Metabolomics, Software
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL-2
Depends methods, Biobase
Imports optimx, Formula, plyr, multtest, BiocParallel, ggplot2
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Suggests xtable, reshape2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metabomxtr_1.14.0.tar.gz
Windows Binary metabomxtr_1.14.0.zip
Mac OS X 10.11 (El Capitan) metabomxtr_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metabomxtr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metabomxtr
Package Short Url https://bioconductor.org/packages/metabomxtr/
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Old Source Packages for BioC 3.7 Source Archive