mdgsa

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see mdgsa.

Multi Dimensional Gene Set Analysis.


Bioconductor version: 3.7

Functions to preform a Gene Set Analysis in several genomic dimensions. Including methods for miRNAs.

Author: David Montaner <dmontaner at cipf.es>

Maintainer: David Montaner <dmontaner at cipf.es>

Citation (from within R, enter citation("mdgsa")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mdgsa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdgsa")
mdgsa_vignette PDF R Script
Reference Manual PDF

Details

biocViews Annotation, GO, GeneSetEnrichment, Pathways, Software
Version 1.12.1
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL
Depends R (>= 2.14)
Imports AnnotationDbi, DBI, GO.db, KEGG.db, cluster, Matrix
System Requirements
URL https://github.com/dmontaner/mdgsa http://www.dmontaner.com
See More
Suggests BiocStyle, knitr, rmarkdown, limma, ALL, hgu95av2.db, RUnit, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mdgsa_1.12.1.tar.gz
Windows Binary mdgsa_1.12.1.zip
Mac OS X 10.11 (El Capitan) mdgsa_1.12.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/mdgsa
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mdgsa
Package Short Url https://bioconductor.org/packages/mdgsa/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive