manta

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see manta.

Microbial Assemblage Normalized Transcript Analysis


Bioconductor version: 3.7

Tools for robust comparative metatranscriptomics.

Author: Ginger Armbrust, Adrian Marchetti

Maintainer: Chris Berthiaume <chrisbee at uw.edu>, Adrian Marchetti <amarchetti at unc.edu>

Citation (from within R, enter citation("manta")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("manta")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("manta")
manta PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataImport, DifferentialExpression, GeneExpression, Genetics, QualityControl, RNASeq, Sequencing, Software, Visualization
Version 1.26.0
In Bioconductor since BioC 2.10 (R-2.15) (12 years)
License Artistic-2.0
Depends R (>= 1.8.0), methods, edgeR(>= 2.5.13)
Imports Hmisc, caroline (>= 0.6.6)
System Requirements
URL http://manta.ocean.washington.edu/
See More
Suggests RSQLite, plotrix
Linking To
Enhances
Depends On Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package manta_1.26.0.tar.gz
Windows Binary manta_1.26.0.zip
Mac OS X 10.11 (El Capitan) manta_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/manta
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/manta
Package Short Url https://bioconductor.org/packages/manta/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive