genphen
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see genphen.
A tool for quantification of associations between genotypes and phenotypes with Bayesian inference and statistical learning techniques
Bioconductor version: 3.7
Genetic association studies are an essential tool for studying the relationship between genotypes and phenotypes and thus for the discovery of disease-causing genetic variants. With genphen we propose a new method for conducting genetic association studies, using a combined approach which is based on both Bayesian inference and statistical learning techniques such as random forest and support vector machines.
Author: Simo Kitanovski
Maintainer: Simo Kitanovski <simo.kitanovski at uni-due.de>
citation("genphen")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("genphen")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genphen")| genphen overview | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Bayesian, Classification, FeatureExtraction, Genetics, GenomeWideAssociation, Regression, SequenceMatching, Sequencing, Software, SupportVectorMachine |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4), stats, graphics, e1071, Biostrings, rstan, ranger, parallel, foreach, doParallel |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | genphen_1.8.0.tar.gz |
| Windows Binary | genphen_1.8.0.zip |
| Mac OS X 10.11 (El Capitan) | genphen_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/genphen |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/genphen |
| Package Short Url | https://bioconductor.org/packages/genphen/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |