gcatest

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see gcatest.

Genotype Conditional Association TEST


Bioconductor version: 3.7

GCAT is an association test for genome wide association studies that controls for population structure under a general class of trait. models.

Author: Wei Hao, Minsun Song, John D. Storey

Maintainer: Wei Hao <whao at princeton.edu>, John D. Storey <jstorey at princeton.edu>

Citation (from within R, enter citation("gcatest")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gcatest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gcatest")
gcat Package PDF R Script
Reference Manual PDF

Details

biocViews DimensionReduction, GenomeWideAssociation, PrincipalComponent, SNP, Software
Version 1.10.0
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL-3
Depends R (>= 3.2)
Imports lfa
System Requirements
URL https://github.com/StoreyLab/gcatest
Bug Reports https://github.com/StoreyLab/gcatest/issues
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Suggests knitr, ggplot2
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gcatest_1.10.0.tar.gz
Windows Binary gcatest_1.10.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) gcatest_1.10.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gcatest
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gcatest
Package Short Url https://bioconductor.org/packages/gcatest/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive