gaggle

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see gaggle.

Broadcast data between R and Gaggle


Bioconductor version: 3.7

This package contains functions enabling data exchange between R and Gaggle enabled bioinformatics software, including Cytoscape, Firegoose and Gaggle Genome Browser.

Author: Paul Shannon <pshannon at systemsbiology.org>

Maintainer: Christopher Bare <cbare at systemsbiology.org>

Citation (from within R, enter citation("gaggle")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("gaggle")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gaggle")
Gaggle Overview PDF R Script
Reference Manual PDF

Details

biocViews Annotation, DataImport, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.48.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL version 2 or newer
Depends R (>= 2.3.0), rJava (>= 0.4), graph(>= 1.10.2), RUnit (>= 0.4.17)
Imports
System Requirements
URL http://gaggle.systemsbiology.net/docs/geese/r/
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package gaggle_1.48.0.tar.gz
Windows Binary gaggle_1.48.0.zip
Mac OS X 10.11 (El Capitan) gaggle_1.48.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/gaggle
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/gaggle
Package Short Url https://bioconductor.org/packages/gaggle/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive