flowQ

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see flowQBData.

Quality control for flow cytometry


Bioconductor version: 3.7

Provides quality control and quality assessment tools for flow cytometry data.

Author: R. Gentleman, F. Hahne, J. Kettman, N. Le Meur, N. Gopalakrishnan

Maintainer: Mike Jiang <wjiang2 at fhcrc.org>

Citation (from within R, enter citation("flowQ")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowQ")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowQ")
Basic Functions for Flow Cytometry Data PDF R Script
Data Quality Assesment for Ungated Flow Cytometry Data PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, FlowCytometry, Infrastructure, Software
Version 1.40.0
In Bioconductor since BioC 2.2 (R-2.7) (16 years)
License Artistic-2.0
Depends R (>= 2.10.0), methods, BiocGenerics, outliers, lattice, flowViz, mvoutlier, bioDist, parody, RColorBrewer, latticeExtra
Imports methods, BiocGenerics, geneplotter, flowCore, flowViz, IRanges
System Requirements ImageMagick
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Suggests flowStats
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowQ_1.40.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/flowQ
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowQ
Package Short Url https://bioconductor.org/packages/flowQ/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive