flowFit

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see flowFitExampleData.

Estimate proliferation in cell-tracking dye studies


Bioconductor version: 3.7

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Citation (from within R, enter citation("flowFit")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowFit")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowFit")
Fitting Functions for Flow Cytometry Data PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, FlowCytometry, Software
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 2.12.2)
Imports flowCore, flowViz, graphics, kza, methods, minpack.lm, gplots
System Requirements
URL
Bug Reports Davide Rambaldi
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Suggests flowFitExampleData
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowFit_1.18.0.tar.gz
Windows Binary flowFit_1.18.0.zip
Mac OS X 10.11 (El Capitan) flowFit_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowFit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowFit
Package Short Url https://bioconductor.org/packages/flowFit/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive