flowDensity

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowDensity.

Sequential Flow Cytometry Data Gating


Bioconductor version: 3.7

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mmalekes at bccrc.ca>

Citation (from within R, enter citation("flowDensity")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowDensity")
Automated alternative to the current manual gating practice PDF R Script
Automated alternative to the current manual gating practice PDF R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews Bioinformatics, Cancer, CellBiology, Clustering, DensityGating, FlowCytData, FlowCytometry, Software, StemCells
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends
Imports flowCore, graphics, car, sp, rgeos, gplots, RFOC, flowWorkspace(>= 3.20.5), methods, stats, grDevices
System Requirements GEOS (>= 3.2.0);for building from source: GEOS from http://trac.osgeo.org/geos/; GEOS OSX frameworks built by William Kyngesburye at http://www.kyngchaos.com/ may be used for source installs on OSX.
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowDensity_1.14.0.tar.gz
Windows Binary flowDensity_1.14.0.zip
Mac OS X 10.11 (El Capitan) flowDensity_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowDensity
Package Short Url https://bioconductor.org/packages/flowDensity/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive