enrichplot

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see enrichplot.

Visualization of Functional Enrichment Result


Bioconductor version: 3.7

The 'enrichplot' package implements several visualization methods for interpreting functional enrichment results obtained from ORA or GSEA analysis. All the visualization methods are developed based on 'ggplot2' graphics.

Author: Guangchuang Yu [aut, cre]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("enrichplot")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("enrichplot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("enrichplot")
enrichplot introduction HTML R Script
Reference Manual PDF

Details

biocViews Annotation, GO, GeneSetEnrichment, KEGG, Pathways, Software, Visualization
Version 1.0.2
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports AnnotationDbi, cowplot, DOSE(>= 3.5.1), ggplot2, ggraph, ggridges, GOSemSim, graphics, grDevices, grid, igraph, methods, reshape2, UpSetR, utils
System Requirements
URL https://github.com/GuangchuangYu/enrichplot
Bug Reports https://github.com/GuangchuangYu/enrichplot/issues
See More
Suggests clusterProfiler, knitr, org.Hs.eg.db, prettydoc
Linking To
Enhances
Depends On Me
Imports Me ChIPseeker, clusterProfiler, debrowser, meshes, ReactomePA
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package enrichplot_1.0.2.tar.gz
Windows Binary enrichplot_1.0.2.zip
Mac OS X 10.11 (El Capitan) enrichplot_1.0.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/enrichplot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/enrichplot
Package Short Url https://bioconductor.org/packages/enrichplot/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive