destiny

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see destiny.

Creates diffusion maps


Bioconductor version: 3.7

Create and plot diffusion maps.

Author: Philipp Angerer [cre, aut], Laleh Haghverdi [ctb], Maren Büttner [ctb], Fabian Theis [ctb], Carsten Marr [ctb], Florian Büttner [ctb]

Maintainer: Philipp Angerer <philipp.angerer at helmholtz-muenchen.de>

Citation (from within R, enter citation("destiny")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("destiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("destiny")
Diffusion-Map-recap.pdf PDF
Diffusion-Maps.pdf PDF
DPT.pdf PDF
Global-Sigma.pdf PDF
tidyverse.pdf PDF
Reference Manual PDF
NEWS Text

Details

biocViews CellBasedAssays, CellBiology, Clustering, Software, Visualization
Version 2.10.2
In Bioconductor since BioC 3.2 (R-3.2) (8.5 years)
License GPL
Depends R (>= 3.3.0)
Imports methods, graphics, grDevices, utils, stats, Matrix, Rcpp (>= 0.10.3), RcppEigen, Biobase, BiocGenerics, SummarizedExperiment, ggplot2, ggthemes, VIM, proxy, igraph, smoother, scales, scatterplot3d
System Requirements C++11
URL https://github.com/theislab/destiny
Bug Reports https://github.com/theislab/destiny/issues
See More
Suggests nbconvertR, testthat, FNN, tidyr, SingleCellExperiment
Linking To Rcpp, RcppEigen, grDevices
Enhances rgl, SingleCellExperiment
Depends On Me simpleSingleCell
Imports Me cytofkit
Suggests Me monocle, scater
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package destiny_2.10.2.tar.gz
Windows Binary destiny_2.10.2.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) destiny_2.10.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/destiny
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/destiny
Package Short Url https://bioconductor.org/packages/destiny/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive