chromPlot

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see chromPlot.

Global visualization tool of genomic data


Bioconductor version: 3.7

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author: Ricardo A. Verdugo and Karen Y. Orostica

Maintainer: Karen Y. Orostica <korostica09 at gmail.com>

Citation (from within R, enter citation("chromPlot")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("chromPlot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromPlot")
General Manual PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License GPL (>= 2)
Depends stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0)
Imports
System Requirements
URL
See More
Suggests qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chromPlot_1.8.0.tar.gz
Windows Binary chromPlot_1.8.0.zip
Mac OS X 10.11 (El Capitan) chromPlot_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chromPlot
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chromPlot
Package Short Url https://bioconductor.org/packages/chromPlot/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive