ccmap

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ccmap.

Combination Connectivity Mapping


Bioconductor version: 3.7

Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.

Author: Alex Pickering

Maintainer: Alex Pickering <alexvpickering at gmail.com>

Citation (from within R, enter citation("ccmap")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ccmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ccmap")
ccmap vignette HTML R Script
Reference Manual PDF
LICENSE Text

Details

biocViews DifferentialExpression, GeneExpression, Microarray, Software, Transcription
Version 1.6.0
In Bioconductor since BioC 3.4 (R-3.3) (7.5 years)
License MIT + file LICENSE
Depends
Imports AnnotationDbi(>= 1.36.2), BiocInstaller(>= 1.24.0), ccdata(>= 1.1.2), doParallel (>= 1.0.10), data.table (>= 1.10.4), foreach (>= 1.4.3), parallel (>= 3.3.3), xgboost (>= 0.6.4), lsa (>= 0.73.1)
System Requirements
URL
See More
Suggests crossmeta, knitr, rmarkdown, testthat, lydata
Linking To
Enhances
Depends On Me
Imports Me crossmeta
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ccmap_1.6.0.tar.gz
Windows Binary ccmap_1.6.0.zip
Mac OS X 10.11 (El Capitan) ccmap_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ccmap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ccmap
Package Short Url https://bioconductor.org/packages/ccmap/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive