ampliQueso

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see ampliQueso.

Analysis of amplicon enrichment panels


Bioconductor version: 3.7

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

Author: Alicja Szabelska <alicja.szabelska at up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka at gmail.com>; Michal Okoniewski <michal at fgcz.ethz.ch>

Maintainer: Michal Okoniewski <michal at fgcz.ethz.ch>

Citation (from within R, enter citation("ampliQueso")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ampliQueso")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ampliQueso")
ampliQueso primer PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, ReportWriting, Sequencing, Software, Transcription, Visualization
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL-2
Depends R (>= 2.15.0), rnaSeqMap(>= 2.17.1), knitr, rgl, ggplot2, gplots, parallel, doParallel, foreach, VariantAnnotation, genefilter, statmod, xtable
Imports edgeR, DESeq, samr
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ampliQueso_1.18.0.tar.gz
Windows Binary ampliQueso_1.18.0.zip
Mac OS X 10.11 (El Capitan) ampliQueso_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ampliQueso
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ampliQueso
Package Short Url https://bioconductor.org/packages/ampliQueso/
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Old Source Packages for BioC 3.7 Source Archive