Vega

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Vega.

An R package for copy number data segmentation


Bioconductor version: 3.7

Vega (Variational Estimator for Genomic Aberrations) is an algorithm that adapts a very popular variational model (Mumford and Shah) used in image segmentation so that chromosomal aberrant regions can be efficiently detected.

Author: Sandro Morganella

Maintainer: Sandro Morganella <sandro at ebi.ac.uk>

Citation (from within R, enter citation("Vega")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Vega")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Vega")
Vega PDF R Script
Reference Manual PDF

Details

biocViews CopyNumberVariation, Software, aCGH
Version 1.28.0
In Bioconductor since BioC 2.8 (R-2.13) (13 years)
License GPL-2
Depends R (>= 2.10)
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Vega_1.28.0.tar.gz
Windows Binary Vega_1.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Vega_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Vega
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Vega
Package Short Url https://bioconductor.org/packages/Vega/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive