UNDO

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see UNDO.

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions


Bioconductor version: 3.7

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Author: Niya Wang <wangny at vt.edu>

Maintainer: Niya Wang <wangny at vt.edu>

Citation (from within R, enter citation("UNDO")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UNDO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UNDO")
UNDO Usage PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software
Version 1.22.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL-2
Depends R (>= 2.15.2), methods, BiocGenerics, Biobase
Imports MASS, boot, nnls, stats, utils
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package UNDO_1.22.0.tar.gz
Windows Binary UNDO_1.22.0.zip
Mac OS X 10.11 (El Capitan) UNDO_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/UNDO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/UNDO
Package Short Url https://bioconductor.org/packages/UNDO/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive