TransView

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TransView.

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets


Bioconductor version: 3.7

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TransView")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransView")
An introduction to TransView PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.24.0
In Bioconductor since BioC 2.11 (R-2.15) (11.5 years)
License GPL-3
Depends methods, GenomicRanges
Imports BiocGenerics, S4Vectors(>= 0.9.25), IRanges, Rsamtools(>= 1.19.38), zlibbioc, gplots
System Requirements
URL http://bioconductor.org/packages/release/bioc/html/TransView.html
See More
Suggests RUnit, pasillaBamSubset
Linking To Rsamtools
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TransView_1.24.0.tar.gz
Windows Binary TransView_1.24.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) TransView_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TransView
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TransView
Package Short Url https://bioconductor.org/packages/TransView/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive