TTMap

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TTMap.

Two-Tier Mapper: a clustering tool based on topological data analysis


Bioconductor version: 3.7

TTMap is a clustering method that groups together samples with the same deviation in comparison to a control group. It is specially useful when the data is small. It is parameter free.

Author: Rachel Jeitziner

Maintainer: Rachel Jeitziner <rachel.jeitziner at epfl.ch>

Citation (from within R, enter citation("TTMap")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TTMap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TTMap")
Manual for the TTMap library PDF R Script
Reference Manual PDF

Details

biocViews Classification, Clustering, DifferentialExpression, Microarray, MultipleComparison, Software
Version 1.2.0
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License GPL-2
Depends rgl, colorRamps
Imports grDevices, graphics, stats, utils, methods, SummarizedExperiment, Biobase
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TTMap_1.2.0.tar.gz
Windows Binary TTMap_1.2.0.zip
Mac OS X 10.11 (El Capitan) TTMap_1.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TTMap
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TTMap
Package Short Url https://bioconductor.org/packages/TTMap/
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Old Source Packages for BioC 3.7 Source Archive