SVM2CRM

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SVM2CRM.

SVM2CRM: support vector machine for cis-regulatory elements detections


Bioconductor version: 3.7

Detection of cis-regulatory elements using svm implemented in LiblineaR.

Author: Guidantonio Malagoli Tagliazucchi <malagoli at ingm.org>

Maintainer: Guidantonio Malagoli Tagliazucchi <guidantonio.malagolitagliazucchi at unimore.it>

Citation (from within R, enter citation("SVM2CRM")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SVM2CRM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SVM2CRM")
The \Rpackage{SVM2CRM} Package PDF R Script
Reference Manual PDF
README Text
NEWS Text

Details

biocViews ChIPSeq, ChipOnChip, Preprocessing, Software, SupportVectorMachine
Version 1.12.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-3
Depends R (>= 3.2.0), LiblineaR, SVM2CRMdata
Imports AnnotationDbi, mclust, GenomicRanges, IRanges, zoo, squash, pls, rtracklayer, ROCR, verification
System Requirements
URL
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SVM2CRM_1.12.0.tar.gz
Windows Binary SVM2CRM_1.12.0.zip
Mac OS X 10.11 (El Capitan) SVM2CRM_1.12.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SVM2CRM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SVM2CRM
Package Short Url https://bioconductor.org/packages/SVM2CRM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive