SCnorm

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see SCnorm.

Normalization of single cell RNA-seq data


Bioconductor version: 3.7

This package implements SCnorm — a method to normalize single-cell RNA-seq data.

Author: Rhonda Bacher

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Citation (from within R, enter citation("SCnorm")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SCnorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SCnorm")
SCnorm Vignette PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Normalization, RNASeq, SingleCell, Software
Version 1.2.1
In Bioconductor since BioC 3.6 (R-3.4) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.4.0)
Imports stats, methods, graphics, grDevices, parallel, quantreg, cluster, moments, data.table, BiocParallel, SingleCellExperiment, SummarizedExperiment, S4Vectors, ggplot2, forcats
System Requirements
URL https://github.com/rhondabacher/SCnorm
Bug Reports https://github.com/rhondabacher/SCnorm/issues
See More
Suggests BiocStyle, knitr, rmarkdown, devtools
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SCnorm_1.2.1.tar.gz
Windows Binary SCnorm_1.2.1.zip
Mac OS X 10.11 (El Capitan) SCnorm_1.2.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/SCnorm
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SCnorm
Bioc Package Browser https://code.bioconductor.org/browse/SCnorm/
Package Short Url https://bioconductor.org/packages/SCnorm/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive