SANTA

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SANTA.

Spatial Analysis of Network Associations


Bioconductor version: 3.7

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Author: Alex J. Cornish and Florian Markowetz

Maintainer: Alex J. Cornish <a.cornish12 at imperial.ac.uk>

Citation (from within R, enter citation("SANTA")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SANTA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SANTA")
Introduction to SANTA HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Clustering, Network, NetworkEnrichment, Software
Version 2.18.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License GPL (>= 2)
Depends R (>= 2.14), igraph
Imports Matrix, snow
System Requirements
URL
See More
Suggests RUnit, BiocGenerics, knitr, knitcitations, formatR, org.Sc.sgd.db, BioNet, DLBCL, msm
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SANTA_2.18.0.tar.gz
Windows Binary SANTA_2.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) SANTA_2.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SANTA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SANTA
Package Short Url https://bioconductor.org/packages/SANTA/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive