SAGx

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see SAGx.

Statistical Analysis of the GeneChip


Bioconductor version: 3.7

A package for retrieval, preparation and analysis of data from the Affymetrix GeneChip. In particular the issue of identifying differentially expressed genes is addressed.

Author: Per Broberg

Maintainer: Per Broberg, <pi.broberg at gmail.com>

Citation (from within R, enter citation("SAGx")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SAGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SAGx")
samroc - example PDF R Script
Reference Manual PDF

Details

biocViews Clustering, DataImport, DifferentialExpression, GeneExpression, GeneSetEnrichment, KEGG, Microarray, MultipleComparison, OneChannel, Pathways, Preprocessing, Regression, Software
Version 1.54.0
In Bioconductor since BioC 1.9 (R-2.4) (17.5 years)
License GPL-3
Depends R (>= 2.5.0), stats, multtest, methods
Imports Biobase, stats4
System Requirements
URL http://home.swipnet.se/pibroberg/expression_hemsida1.html
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Suggests KEGG.db, hu6800.db, MASS
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SAGx_1.54.0.tar.gz
Windows Binary SAGx_1.54.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) SAGx_1.54.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SAGx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SAGx
Package Short Url https://bioconductor.org/packages/SAGx/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive