ReQON

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ReQON.

Recalibrating Quality Of Nucleotides


Bioconductor version: 3.7

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Citation (from within R, enter citation("ReQON")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")
ReQON Tutorial PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version 1.26.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License GPL-2
Depends R (>= 3.0.2), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
System Requirements Java version >= 1.6
URL
See More
Suggests BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ReQON_1.26.0.tar.gz
Windows Binary ReQON_1.26.0.zip
Mac OS X 10.11 (El Capitan) ReQON_1.26.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/ReQON
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ReQON
Package Short Url https://bioconductor.org/packages/ReQON/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive