Rchemcpp

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Rchemcpp.

Similarity measures for chemical compounds


Bioconductor version: 3.7

The Rchemcpp package implements the marginalized graph kernel and extensions, Tanimoto kernels, graph kernels, pharmacophore and 3D kernels suggested for measuring the similarity of molecules.

Author: Michael Mahr, Guenter Klambauer

Maintainer: Guenter Klambauer <klambauer at bioinf.jku.at>

Citation (from within R, enter citation("Rchemcpp")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rchemcpp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rchemcpp")
Rchemcpp PDF R Script
Reference Manual PDF

Details

biocViews Bioinformatics, CellBasedAssays, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Proteomics, Software, Visualization
Version 2.18.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License GPL (>= 2.1)
Depends R (>= 2.15.0)
Imports Rcpp (>= 0.11.1), methods, ChemmineR
System Requirements GNU make
URL http://www.bioinf.jku.at/software/Rchemcpp
See More
Suggests apcluster, kernlab
Linking To Rcpp
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rchemcpp_2.18.0.tar.gz
Windows Binary Rchemcpp_2.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Rchemcpp_2.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rchemcpp
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rchemcpp
Package Short Url https://bioconductor.org/packages/Rchemcpp/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive