RamiGO

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see RamiGO.

AmiGO visualize R interface


Bioconductor version: 3.7

R interface sending requests to AmiGO visualize, retrieving DAG GO trees, parsing GraphViz DOT format files and exporting GML files for Cytoscape. Deprecated:Also uses RCytoscape to interactively display AmiGO trees in Cytoscape.

Author: Markus Schroeder, Daniel Gusenleitner, John Quackenbush, Aedin Culhane, Benjamin Haibe-Kains

Maintainer: Markus Schroeder <markus.schroeder at ucdconnect.ie>

Citation (from within R, enter citation("RamiGO")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RamiGO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RamiGO")
RamiGO: An Introduction (HowTo) PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Classification, GO, GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.28.0
In Bioconductor since BioC 2.9 (R-2.14) (12.5 years)
License Artistic-2.0
Depends gsubfn, methods
Imports igraph, RCurl, png, graph
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RamiGO_1.28.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RamiGO
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RamiGO
Package Short Url https://bioconductor.org/packages/RamiGO/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive