Pviz

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Pviz.

Peptide Annotation and Data Visualization using Gviz


Bioconductor version: 3.7

Pviz adapts the Gviz package for protein sequences and data.

Author: Renan Sauteraud, Mike Jiang, Raphael Gottardo

Maintainer: Renan Sauteraud <rsautera at fhcrc.org>

Citation (from within R, enter citation("Pviz")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Pviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Pviz")
The Pviz users guide PDF R Script
Reference Manual PDF

Details

biocViews Microarray, Proteomics, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), Gviz(>= 1.7.10)
Imports biovizBase, Biostrings, GenomicRanges, IRanges, data.table, methods
System Requirements
URL
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Suggests knitr, pepDat
Linking To
Enhances
Depends On Me
Imports Me Pbase
Suggests Me pepStat
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Pviz_1.14.0.tar.gz
Windows Binary Pviz_1.14.0.zip
Mac OS X 10.11 (El Capitan) Pviz_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Pviz
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Pviz
Package Short Url https://bioconductor.org/packages/Pviz/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive