PowerExplorer

This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see PowerExplorer.

Power Estimation Tool for RNA-Seq and proteomics data


Bioconductor version: 3.7

Estimate and predict power among groups and multiple sample sizes with simulated data, the simulations are operated based on distribution parameters estimated from the provided input dataset.

Author: Xu Qiao [aut, cre], Laura Elo [cph]

Maintainer: Xu Qiao <xu.qiao at utu.fi>

Citation (from within R, enter citation("PowerExplorer")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("PowerExplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PowerExplorer")
PowerExplorer Manual PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ChIPSeq, Coverage, DifferentialExpression, MultipleComparison, Proteomics, RNASeq, Sequencing, Software
Version 1.0.1
In Bioconductor since BioC 3.7 (R-3.5) (6 years)
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports DESeq2, ROTS, vsn, stats, utils, methods, gridExtra, MASS, data.table, ggplot2, Biobase, S4Vectors, BiocParallel
System Requirements
URL https://gitlab.utu.fi/CompBioMedNGSTools/PowerExplorer
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Suggests knitr, rmarkdown
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PowerExplorer_1.0.1.tar.gz
Windows Binary PowerExplorer_1.0.1.zip
Mac OS X 10.11 (El Capitan) PowerExplorer_1.0.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/PowerExplorer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PowerExplorer
Bioc Package Browser https://code.bioconductor.org/browse/PowerExplorer/
Package Short Url https://bioconductor.org/packages/PowerExplorer/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive