OncoScore

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see OncoScore.

A tool to identify potentially oncogenic genes


Bioconductor version: 3.7

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [aut], Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut, cre], Roberta Spinelli [ctb]

Maintainer: Daniele Ramazzotti <daniele.ramazzotti at yahoo.com>

Citation (from within R, enter citation("OncoScore")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OncoScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")
OncoScore PDF R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Software
Version 1.8.0
In Bioconductor since BioC 3.3 (R-3.3) (8 years)
License file LICENSE
Depends R (>= 3.4)
Imports biomaRt, grDevices, graphics, utils
System Requirements
URL https://github.com/danro9685/OncoScore
Bug Reports https://github.com/danro9685/OncoScore
See More
Suggests BiocGenerics, BiocStyle, knitr, testthat
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package OncoScore_1.8.0.tar.gz
Windows Binary OncoScore_1.8.0.zip
Mac OS X 10.11 (El Capitan) OncoScore_1.8.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/OncoScore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/OncoScore
Package Short Url https://bioconductor.org/packages/OncoScore/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive