NetSAM

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see NetSAM.

Network Seriation And Modularization


Bioconductor version: 3.7

The NetSAM (Network Seriation and Modularization) package takes an edge-list representation of a network as an input, performs network seriation and modularization analysis, and generates as files that can be used as an input for the one-dimensional network visualization tool NetGestalt (http://www.netgestalt.org) or other network analysis.

Author: Jing Wang <jing.wang.2 at vanderbilt.edu>

Maintainer: Bing Zhang <bing.zhang at vanderbilt.edu>

Citation (from within R, enter citation("NetSAM")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("NetSAM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NetSAM")
NetSAM PDF R Script
Reference Manual PDF

Details

biocViews Network, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 2.13 (R-3.0) (10.5 years)
License LGPL
Depends R (>= 2.15.1), methods, igraph (>= 0.6-1), seriation (>= 1.0-6), graph(>= 1.34.0)
Imports methods
System Requirements
URL
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Suggests RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package NetSAM_1.20.0.tar.gz
Windows Binary NetSAM_1.20.0.zip
Mac OS X 10.11 (El Capitan) NetSAM_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/NetSAM
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/NetSAM
Package Short Url https://bioconductor.org/packages/NetSAM/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive